Bioinformatics AI Agent Skills

A comprehensive collection of 146+ ready-to-use scientific and research skills (now including financial/SEC research, U.S. Treasury fiscal data, OFR Hedge Fund Monitor, and Alpha Vantage market data) for any AI agent that supports the open Agent Skills standard, created by K-Dense. Works with Cursor, Claude Code, Codex, and more. Transform your AI agent into a research assistant capable of executi

MCP (Model Context Protocol) server for Biothings.io This server implements the Model Context Protocol (MCP) for BioThings, providing a standardized interface for accessing and manipulating biomedical data. MCP enables AI assistants and agents to access specialized biomedical knowledge through structured interfaces to authoritative data sources. Supported BioThings data sources include: - mygene.i

A Model Context Protocol (MCP) server that provides comprehensive access to the UCSC Genome Browser API. This server enables LLM applications to query genomic data, sequences, tracks, and metadata from the UCSC Genome Browser. This MCP server exposes 12 tools that cover all major UCSC Genome Browser API endpoints: - findgenome - Search for genomes using keywords, accession IDs, or organism names -

MCP server for spatial transcriptomics analysis via natural language Using Claude Code / Codex / OpenCode? Just paste this: Manual installation See Installation Guide for detailed setup including virtual environments and all MCP clients. 60+ methods across 15 categories. Supports 10x Visium, Xenium, Slide-seq v2, MERFISH, seqFISH. MIT License · GitHub · Issues

Search and retrieve biomedical data — genes, variants, clinical trials, articles, drugs, diseases, pathways, proteins, adverse events, pharmacogenomics, and phenotype-disease matching. 15 sources including PubMed, ClinicalTrials.gov, ClinVar, OncoKB, Reactome, UniProt, PharmGKB, OpenFDA, Monarch. Use when asked about gene function, variant pathogenicity, trial matching, drug safety, resistance mechanisms, hereditary syndromes, or literature evidence.